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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004182.1_44483_47913_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
44483 - 47913
Intron Length:
3431

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTACT
5'SS Class:
strong_major
3'SS Sequence:
CTTGAAATCAGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATACAT
U12 Branch Point Sequence:
GATGCTTGAAAT
Flanking Amino Acid:
AIQIDLYDWYSFYICHLSVS
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.8
82.2
30
Major BPS
66.1
0.4
1
73
31.5
Major PPT
47.8
-0.1
1.7
50.7
41.6
Minor 5ss
39
-1.2
2.7
51.8
44.8
Minor BPS
52
0.14
1.7
68.31
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002516
Chromosome:
PEDO01004182.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040994
22905 - 49362
26458