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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004182.1_48135_48287_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
48135 - 48287
Intron Length:
153

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAT|GCTTGTAGG
5'SS Class:
weak_major
3'SS Sequence:
TGCCACACTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAA
U12 Branch Point Sequence:
ACTTCCTAAACT
Flanking Amino Acid:
DNLQTINFIDVLDTAVALNQ
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.9
0.23
1.5
58
46.5
Major BPS
72.7
0.57
1
72.1
31.1
Major PPT
62.9
0.29
0.9
54.9
34.9
Minor 5ss
29.7
-2.3
3.6
39
39.4
Minor BPS
73.9
0.83
1.6
86.17
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002516
Chromosome:
PEDO01004182.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029151
27048 - 49362
22315