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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004182.1_7152_7847_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7152 - 7847
Intron Length:
696

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTGAGTCTG
5'SS Class:
major
3'SS Sequence:
ATTCTTCCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
AGTGTTTTAACC
Flanking Amino Acid:
GEDEELKKQARNVINTNCSA
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.3
68.8
43.8
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
80.2
0.68
0.8
78
30.1
Minor 5ss
33.8
-1.8
3
40.5
38.8
Minor BPS
64.8
0.44
1.4
68.66
37

Associated Gene:

Gene:
LFNG
Ensembl Gene ID:
ENSAPLG00000002412
Chromosome:
PEDO01004182.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036912
21 - 11428
11408
ENSAPLT00000031422
21 - 9969
9949
ENSAPLT00000002433
21 - 9823
9803