Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004182.1_8227_8390_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8227 - 8390

Intron Length:

164

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTGAGGGGG

5'SS Class:

major

3'SS Sequence:

CCCTCTCTCGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTCTCAC

U12 Branch Point Sequence:

GAGGTCTCACTG

Flanking Amino Acid:

ATERISENKMHPVHFWFATG

Intron Amino Acid Position:

230

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.8

0.59

56.6

42.5

Major BPS

67.3

0.43

1.2

71.3

36.7

Major PPT

77.1

0.61

0.7

71.7

26.3

Minor 5ss

23.3

-3.1

3.2

25.4

39.4

Minor BPS

40.4

-0.8

1.8

36.53

39.8

Associated Gene:

Gene:

LFNG

Ensembl Gene ID:

ENSAPLG00000002412

Chromosome:

PEDO01004182.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036912

21 - 11428

11408