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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004182.1_8227_8768_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8227 - 8768
Intron Length:
542

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGGGGG
5'SS Class:
major
3'SS Sequence:
TGTCTCCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTGCAG
U12 Branch Point Sequence:
TCTGCTGCAGCT
Flanking Amino Acid:
ATERISENKMRGPLHEHGGE
Intron Amino Acid Position:
230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.59
1
56.6
42.5
Major BPS
38.5
-0.7
1.7
45
47.8
Major PPT
75.8
0.58
0.8
69.2
31.5
Minor 5ss
23.3
-3.1
3.2
25.4
39.4
Minor BPS
42
-0.5
2.3
63.32
47.3

Associated Gene:

Gene:
LFNG
Ensembl Gene ID:
ENSAPLG00000002412
Chromosome:
PEDO01004182.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031422
21 - 9969
9949
ENSAPLT00000002433
21 - 9823
9803