Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004221.1_497_590_R

Intron Information:

Intron Rank:

153827

Intron Class:

major

Intron Phase:

Intron Coordinates:

497 - 590

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTGAGTCAC

5'SS Class:

strong_major

3'SS Sequence:

CTCTTTCAGCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTCAG

U12 Branch Point Sequence:

TTCTCTTTCAGC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.1

0.73

68.8

Major BPS

63.7

0.34

1.6

39.9

Major PPT

70.7

0.47

65.6

40.2

Minor 5ss

29.6

-2.3

2.8

36.4

40.6

Minor BPS

54.7

0.13

2.1

69.26

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030253

Chromosome:

PEDO01004221.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032839

115 - 792

678