Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004221.1_501_590_R

Intron Information:

Intron Rank:

153830

Intron Class:

major

Intron Phase:

Intron Coordinates:

501 - 590

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTGAGTCAC

5'SS Class:

strong_major

3'SS Sequence:

TCTTCTCTTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTCACAG

U12 Branch Point Sequence:

TGCTTCTTCTCT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.1

0.73

68.8

Major BPS

46.6

-0.2

1.5

58.3

39.2

Major PPT

90.3

0.91

0.6

88.5

21.1

Minor 5ss

29.6

-2.3

2.8

36.4

40.6

Minor BPS

42.4

-0.4

3.6

71.72

45.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030253

Chromosome:

PEDO01004221.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047782

21 - 1512

1492