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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004221.1_807_896_R

Intron Information:

Intron Rank:
153831
Intron Class:
major
Intron Phase:
Intron Coordinates:
807 - 896
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTCGC
5'SS Class:
major
3'SS Sequence:
TCTCCTTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTCAG
U12 Branch Point Sequence:
TGCTGCTCCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
63.5
42.9
Major BPS
53.2
0.08
1.7
65.3
43.7
Major PPT
85.4
0.8
0.7
80.4
24.8
Minor 5ss
29.6
-2.3
2.8
36.5
40.5
Minor BPS
44.5
-0.3
2.3
64.4
46.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030253
Chromosome:
PEDO01004221.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047782
21 - 1512
1492