Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004231.1_895_972_R

Intron Information:

Intron Rank:

154991

Intron Class:

major

Intron Phase:

Intron Coordinates:

895 - 972

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGCCAA

5'SS Class:

strong_major

3'SS Sequence:

CTCCTCCCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTCGAA

U12 Branch Point Sequence:

TTCTCCCCATTT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.1

0.8

0.9

70.2

37.7

Major BPS

64.5

0.36

1.3

64.5

42.8

Major PPT

74.8

0.56

0.7

24.8

Minor 5ss

31.7

-2.1

37.9

46.9

Minor BPS

48.2

-0

2.1

72.84

44.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030861

Chromosome:

PEDO01004231.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021330

745 - 1551

807