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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004232.1_16388_18233_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16388 - 18233
Intron Length:
1846

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAGGGA
5'SS Class:
major
3'SS Sequence:
TTTTCTCTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTTTGAATGAGT
Flanking Amino Acid:
TKYGAQGERQIPVLQTNNGP
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
62.5
37.9
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
88.2
0.86
0.6
81.7
30.3
Minor 5ss
22.5
-3.2
3.3
29
43.5
Minor BPS
44
-0.3
2.5
73.39
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027613
Chromosome:
PEDO01004232.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041135
16307 - 19107
2801