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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004263.1_255_447_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
255 - 447
Intron Length:
193

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGT|GTGAAAGAG
5'SS Class:
weak_major
3'SS Sequence:
TGGCTCCAGGAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTGTGAT
U12 Branch Point Sequence:
GTGTCTGTGATT
Flanking Amino Acid:
PSLLLCAPVGVHQACRRRGG
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.6
0.11
1.1
48.4
36.1
Major BPS
68.9
0.47
1.2
60.7
45.9
Major PPT
49.1
-0
1.2
49.7
38.7
Minor 5ss
25.7
-2.8
3.3
29.4
43.4
Minor BPS
50.6
0.1
2
70.84
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027489
Chromosome:
PEDO01004263.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018484
124 - 556
433