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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004264.1_151_532_F

Intron Information:

Intron Rank:
129503
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
151 - 532
Intron Length:
382

Sequence Information:

Terminal Dinucleotides:
GT-GG
5'SS Sequence:
CGA|GTGAGTGCC
5'SS Class:
major
3'SS Sequence:
TCCATCATTCAGG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CCATCAT
U12 Branch Point Sequence:
GGATCCATCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1
63
37.2
Major BPS
63.3
0.33
1.2
65.6
39.7
Major PPT
37.7
-0.7
3.2
52.9
40.6
Minor 5ss
29.8
-2.3
3.1
32.5
35.7
Minor BPS
48.7
-0
2
67.66
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019673
Chromosome:
PEDO01004264.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031307
21 - 1591
1571