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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004325.1_1461_5107_F

Intron Information:

Intron Rank:
136317
Intron Class:
major
Intron Phase:
Intron Coordinates:
1461 - 5107
Intron Length:
3647

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTATTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTGTTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
80.4
33.7
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
83.7
0.76
0.8
82.1
34.6
Minor 5ss
34.1
-1.8
3.3
45.4
43.9
Minor BPS
59.9
0.39
1.6
78.46
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023452
Chromosome:
PEDO01004325.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035957
1359 - 5742
4384