Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004370.1_3403_3495_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3403 - 3495

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAACCTGG

5'SS Class:

major

3'SS Sequence:

TCTCTCCTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGCTAAG

U12 Branch Point Sequence:

TCTCTCCTATGC

Flanking Amino Acid:

HNARIDAHNEMGCTPLALAV

Intron Amino Acid Position:

142

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.7

0.56

1.2

60.6

46.7

Major BPS

55.4

0.13

1.6

63.6

42.5

Major PPT

86.2

0.81

0.7

80.7

24.5

Minor 5ss

48.8

-0.1

2.6

46.2

Minor BPS

43.3

-0.5

2.1

55.69

42.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000009327

Chromosome:

PEDO01004370.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009704

2627 - 5777

3151