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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004370.1_4878_5606_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4878 - 5606
Intron Length:
729

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGGGTACC
5'SS Class:
major
3'SS Sequence:
ACTTCCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
CGTTTCTGACTT
Flanking Amino Acid:
VPEGSCPVTTDYVLLLSTEY
Intron Amino Acid Position:
260

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
67.6
37.6
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
83.2
0.75
0.8
77.1
30.8
Minor 5ss
30.3
-2.3
2.9
34
35.4
Minor BPS
50.8
0.1
1.8
68.72
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009327
Chromosome:
PEDO01004370.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009704
2627 - 5777
3151