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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004373.1_114_777_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
114 - 777
Intron Length:
664

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAACA
5'SS Class:
strong_major
3'SS Sequence:
TACTCTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
GCTTTTTTACCA
Flanking Amino Acid:
EDEMKANIFKLLEPGQDWHT
Intron Amino Acid Position:
409

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.8
31.6
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
83.7
0.76
0.8
81
30.6
Minor 5ss
33.1
-1.9
2.9
41.4
44.7
Minor BPS
59.4
0.29
1.6
66.82
40.3

Associated Gene:

Gene:
IRF1
Ensembl Gene ID:
ENSAPLG00000009708
Chromosome:
PEDO01004373.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010113
21 - 5405
5385