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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004373.1_16211_16540_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16211 - 16540
Intron Length:
330

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
ATTAACTTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TCTTGATTAACT
Flanking Amino Acid:
QSLIPSLAEEGECETERRNT
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95
1.06
0.7
93.7
19.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
78.5
0.64
0.9
74.2
40.4
Minor 5ss
39.4
-1.2
3.1
57.6
46.6
Minor BPS
64.6
0.54
2
84.99
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018945
Chromosome:
PEDO01004373.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037317
16118 - 18717
2600