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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004373.1_2129_2252_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2129 - 2252
Intron Length:
124

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGTC
5'SS Class:
strong_major
3'SS Sequence:
CTTATTTTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TCGTTCTTATTT
Flanking Amino Acid:
REARSRSKRKPYEDMRTEES
Intron Amino Acid Position:
307

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.8
81.4
30.7
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
84.7
0.78
0.7
80.7
31.2
Minor 5ss
43.3
-0.7
3.1
60.6
44.5
Minor BPS
62.7
0.48
1.6
74.68
43.1

Associated Gene:

Gene:
IRF1
Ensembl Gene ID:
ENSAPLG00000009708
Chromosome:
PEDO01004373.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010113
21 - 5405
5385