Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004373.1_2770_2955_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2770 - 2955

Intron Length:

186

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGCGTGCT

5'SS Class:

strong_major

3'SS Sequence:

CTTTTATTAATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTTAT

U12 Branch Point Sequence:

CTTTTATTAATA

Flanking Amino Acid:

CLFRSWAIHTGRYKVGEKDP

Intron Amino Acid Position:

231

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.5

0.77

0.9

75.1

34.9

Major BPS

84.1

0.85

0.9

75.3

39.4

Major PPT

77.3

0.61

0.9

74.2

34.3

Minor 5ss

28.8

-2.4

3.3

41.4

45.1

Minor BPS

67.3

0.54

1.6

75.76

35.9

Associated Gene:

Gene:

IRF1

Ensembl Gene ID:

ENSAPLG00000009708

Chromosome:

PEDO01004373.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010113

21 - 5405

5385