Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004373.1_3056_4814_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3056 - 4814

Intron Length:

1759

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGGGTCGC

5'SS Class:

major

3'SS Sequence:

GGTTTTCCTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

GGTTTCTTAATT

Flanking Amino Acid:

APDCTAPHGEDKMMFQIPWK

Intron Amino Acid Position:

198

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.9

0.68

63.1

43.4

Major BPS

96.5

1.15

0.6

34.2

Major PPT

81.3

0.7

0.9

77.9

36.6

Minor 5ss

27.7

-2.6

35.1

41.4

Minor BPS

78.4

0.97

1.1

85.21

34.9

Associated Gene:

Gene:

IRF1

Ensembl Gene ID:

ENSAPLG00000009708

Chromosome:

PEDO01004373.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010113

21 - 5405

5385