Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004413.1_4354_4463_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4354 - 4463

Intron Length:

110

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGAAAC

5'SS Class:

strong_major

3'SS Sequence:

TCCCCGCCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTCAC

U12 Branch Point Sequence:

AGGCCCCTCACC

Flanking Amino Acid:

HCSVCDNCVEEFDHHCPWVN

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.1

0.9

0.8

80.3

26.9

Major BPS

60.1

0.25

1.1

62.9

34.3

Major PPT

0.38

0.8

57.3

33.4

Minor 5ss

28.3

-2.5

2.8

33.7

41.9

Minor BPS

46.2

-0.3

56.07

41.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024264

Chromosome:

PEDO01004413.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024358

413 - 4745

4333