Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004432.1_2287_2395_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2287 - 2395

Intron Length:

109

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTGAGTCAC

5'SS Class:

strong_major

3'SS Sequence:

GGCACTGTTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTAAC

U12 Branch Point Sequence:

GTGGCTTTAACG

Flanking Amino Acid:

DYVCVESSLLGASSGVCAPH

Intron Amino Acid Position:

340

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.7

0.72

68.4

38.7

Major BPS

77.3

0.68

79.3

29.4

Major PPT

66.3

0.37

61.1

44.5

Minor 5ss

28.6

-2.5

2.7

27.3

36.3

Minor BPS

64.6

0.32

1.5

63.58

44.6

Associated Gene:

Gene:

GHDC

Ensembl Gene ID:

ENSAPLG00000020118

Chromosome:

PEDO01004432.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047770

2032 - 4114

2083