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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004432.1_2983_3211_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2983 - 3211
Intron Length:
229

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
GCCCTCTCTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
GTCACACTGACC
Flanking Amino Acid:
LYCPFYRAAGALLGVNLWPE
Intron Amino Acid Position:
208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.7
81.3
32.8
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
74.5
0.55
0.8
65
36.4
Minor 5ss
30.9
-2.2
3.2
39.6
46.4
Minor BPS
45.8
-0.3
2
57.78
40.5

Associated Gene:

Gene:
GHDC
Ensembl Gene ID:
ENSAPLG00000020118
Chromosome:
PEDO01004432.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047770
2032 - 4114
2083