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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004443.1_6354_6475_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6354 - 6475
Intron Length:
122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
TCCCCTTCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTCAC
U12 Branch Point Sequence:
TCACTGTTACCG
Flanking Amino Acid:
RSRSRSKSVDRDRRHKDRDR
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
65.8
40.2
Major BPS
67.3
0.43
1.2
71.3
36.7
Major PPT
76.9
0.61
0.7
72
26
Minor 5ss
33.7
-1.9
3
42.6
44.4
Minor BPS
43.2
-0.6
2.2
48.66
45

Associated Gene:

Gene:
DDX23
Ensembl Gene ID:
ENSAPLG00000002868
Chromosome:
PEDO01004443.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002907
2193 - 7019
4827