Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004458.1_1529_1612_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1529 - 1612

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAT|GTGAGTGGG

5'SS Class:

major

3'SS Sequence:

TGCCATCCCACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTATAT

U12 Branch Point Sequence:

TTCTGCTGACCC

Flanking Amino Acid:

DKRDITVWVQYHDINVGLIV

Intron Amino Acid Position:

479

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.64

65.2

40.8

Major BPS

61.5

0.29

1.3

45.5

Major PPT

68.4

0.41

0.9

34.9

Minor 5ss

29.1

-2.4

3.1

35.7

41.3

Minor BPS

-0.1

2.2

66.78

44.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000014278

Chromosome:

PEDO01004458.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014872

869 - 4902

4034