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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004458.1_1856_1941_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1856 - 1941
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGGGTGCG
5'SS Class:
major
3'SS Sequence:
GGTGTCCCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GATTAAT
U12 Branch Point Sequence:
GGGGGATTAATG
Flanking Amino Acid:
KSVPVVLIVTAKPKLDDRGC
Intron Amino Acid Position:
398

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1
58.5
40.7
Major BPS
74
0.6
1.2
75.9
36.3
Major PPT
65.7
0.35
1
55
41.4
Minor 5ss
26.3
-2.7
3.2
28.5
38.7
Minor BPS
42
-0.7
2
41.66
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014278
Chromosome:
PEDO01004458.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014872
869 - 4902
4034