Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004458.1_2562_2637_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2562 - 2637

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTGAGCTGG

5'SS Class:

major

3'SS Sequence:

TCCCCTGCTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTCTCAC

U12 Branch Point Sequence:

CGTGTCTCACCG

Flanking Amino Acid:

TSSPRALDVYDFPEDPQLEM

Intron Amino Acid Position:

216

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.7

0.56

44.6

Major BPS

67.3

0.43

1.2

71.3

36.7

Major PPT

74.5

0.55

0.8

68.4

31.9

Minor 5ss

38.3

-1.3

47.3

48.1

Minor BPS

44.1

-0.5

1.9

47.31

45.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000014278

Chromosome:

PEDO01004458.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014872

869 - 4902

4034