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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004496.1_1418_1841_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1418 - 1841
Intron Length:
424

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGGGCA
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCCAAA
U12 Branch Point Sequence:
TTTTTTTTTACA
Flanking Amino Acid:
QIPKLLKQIQEFKDLAPRID
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.2
60.5
38.1
Major BPS
49
-0
1.3
56.7
38.7
Major PPT
98.8
1.1
0.5
95.2
16.3
Minor 5ss
32
-2.1
3.3
39.5
46
Minor BPS
71.2
0.66
1.5
82.45
31.9

Associated Gene:

Gene:
PPP1R37
Ensembl Gene ID:
ENSAPLG00000010184
Chromosome:
PEDO01004496.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010604
1229 - 9688
8460