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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004496.1_2461_4652_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2461 - 4652
Intron Length:
2192

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTAAGGCTC
5'SS Class:
major
3'SS Sequence:
CTTCGTTCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CTTTTTATACCC
Flanking Amino Acid:
DLEQTSLDEDGASALFDMIE
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1.3
67.8
43.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
74.7
0.56
0.8
73.1
31.8
Minor 5ss
36.7
-1.5
3.5
50.2
39.8
Minor BPS
49.7
-0
1.9
66.02
40.2

Associated Gene:

Gene:
PPP1R37
Ensembl Gene ID:
ENSAPLG00000010184
Chromosome:
PEDO01004496.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010604
1229 - 9688
8460