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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004521.1_1163_1373_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1163 - 1373
Intron Length:
211

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGAACG
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCATTTTTTATT
Flanking Amino Acid:
ELASVTLAIAVINVTAISVG
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
69.4
41.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
89.1
0.88
0.6
87.7
22.4
Minor 5ss
34.3
-1.8
2.9
43
43.5
Minor BPS
57
0.3
1.6
71.31
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020164
Chromosome:
PEDO01004521.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037793
21 - 1898
1878