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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004521.1_850_1060_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
850 - 1060
Intron Length:
211

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGACC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTGCGCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CCCTGCTCACCT
Flanking Amino Acid:
KKLLILAGPLILIQLMIFLI
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
72.2
37.2
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
71
0.47
0.9
68.8
37.2
Minor 5ss
33.7
-1.9
3.1
41.4
39.1
Minor BPS
44.1
-0.3
2.2
59.08
50

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020164
Chromosome:
PEDO01004521.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037793
21 - 1898
1878