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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004559.1_233_359_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
233 - 359
Intron Length:
127

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGACAG
5'SS Class:
major
3'SS Sequence:
AGTGCCCTACAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTCCCAC
U12 Branch Point Sequence:
AGTGCCCTACAA
Flanking Amino Acid:
PSLDLTGLGVGWPAGYPRGA
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.58
1
58.6
42.2
Major BPS
50
0
1.2
61.8
35.9
Major PPT
50.7
0.02
1.1
47.1
40.1
Minor 5ss
25.4
-2.8
2.8
22.1
37
Minor BPS
44.5
-0.4
2
56.69
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022025
Chromosome:
PEDO01004559.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036422
132 - 3038
2907