Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004559.1_578_794_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

578 - 794

Intron Length:

217

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGGGCTG

5'SS Class:

major

3'SS Sequence:

GGCCCTTCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTCTCAC

U12 Branch Point Sequence:

CGTGTCTCACGG

Flanking Amino Acid:

LKEQNIPGLAGVDTRALTKK

Intron Amino Acid Position:

107

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.3

0.57

1.1

60.4

45.8

Major BPS

67.3

0.43

1.2

71.3

36.7

Major PPT

72.1

0.5

0.9

36.3

Minor 5ss

27.5

-2.6

3.5

37.1

47.5

Minor BPS

38.6

-1

38.97

44.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022025

Chromosome:

PEDO01004559.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036422

132 - 3038

2907