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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004610.1_644_1119_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
644 - 1119
Intron Length:
476

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTCAGTTTG
5'SS Class:
major
3'SS Sequence:
TGGGGTGGTTCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
ATTTATTGAGCA
Flanking Amino Acid:
TNFGAISPFFGGILGTFRAV
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.3
69.7
43.7
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
58.5
0.19
1.2
53.8
49.8
Minor 5ss
38.8
-1.3
2.8
41.9
44.6
Minor BPS
50
-0
1.8
67.95
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017882
Chromosome:
PEDO01004610.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045551
411 - 1147
737