Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004685.1_761_1194_R

Intron Information:

Intron Rank:

142701

Intron Class:

major

Intron Phase:

Intron Coordinates:

761 - 1194

Intron Length:

434

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTGAGGCCT

5'SS Class:

major

3'SS Sequence:

TTCTCTTTCACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCCCAG

U12 Branch Point Sequence:

TTCTCTTTCACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.1

0.59

63.1

Major BPS

49.3

-0

1.7

66.4

42.2

Major PPT

87.1

0.83

0.7

25.6

Minor 5ss

27.5

-2.6

3.2

31.7

42.2

Minor BPS

68.9

0.59

1.7

78.6

38.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024046

Chromosome:

PEDO01004685.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047171

21 - 1467

1447