Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004690.1_1647_1780_F

Intron Information:

Intron Rank:

125470

Intron Class:

major

Intron Phase:

Intron Coordinates:

1647 - 1780

Intron Length:

134

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGCCTG

5'SS Class:

strong_major

3'SS Sequence:

TGTGTCTTACTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTAGAAA

U12 Branch Point Sequence:

TGTGTCTTACTA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.7

0.79

0.9

68.8

43.8

Major BPS

53.7

0.09

1.4

64.3

39.6

Major PPT

0.45

63.4

42.9

Minor 5ss

-1.6

3.2

46.7

48.6

Minor BPS

56.3

0.19

1.7

40.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017619

Chromosome:

PEDO01004690.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041826

554 - 3198

2645