Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004727.1_326_1324_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

326 - 1324

Intron Length:

999

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACGGGGT

5'SS Class:

major

3'SS Sequence:

TGCCCCCTCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTGCCAT

U12 Branch Point Sequence:

CTGCTGCCATCT

Flanking Amino Acid:

GAGEYGGTYKVTIYELENFQ

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.7

0.7

43.2

Major BPS

49.9

-0

1.4

61.8

44.5

Major PPT

70.9

0.47

0.8

61.4

Minor 5ss

29.9

-2.3

3.8

46.9

48.5

Minor BPS

33.6

-1.1

2.3

49.53

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000010100

Chromosome:

PEDO01004727.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010542

9 - 1399

1391