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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004733.1_6197_7350_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6197 - 7350
Intron Length:
1154

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACTGCA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTGAA
U12 Branch Point Sequence:
AGGTGTTGAAGG
Flanking Amino Acid:
FLGTERSQRGGSSLEMKPGA
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1.1
75
35.3
Major BPS
72
0.55
1.1
63.4
44.3
Major PPT
86.3
0.82
0.7
81.2
23.9
Minor 5ss
38.5
-1.3
3.1
50.7
45.7
Minor BPS
41.6
-0.7
2.1
42.84
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013811
Chromosome:
PEDO01004733.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014384
4218 - 8159
3942