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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004737.1_1906_2008_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1906 - 2008
Intron Length:
103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
CCCCCTGCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTCAC
U12 Branch Point Sequence:
TGGGCCTCACCT
Flanking Amino Acid:
FQVPQDVVSPRYDPDSGHDS
Intron Amino Acid Position:
603

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
42.7
Major BPS
54.7
0.12
1.2
59.2
39.1
Major PPT
66.3
0.37
0.8
60
29.5
Minor 5ss
37.8
-1.4
3
46.8
48.5
Minor BPS
49.4
0.03
2
68.77
47.7

Associated Gene:

Gene:
TRIM46
Ensembl Gene ID:
ENSAPLG00000009819
Chromosome:
PEDO01004737.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044116
637 - 6149
5513
ENSAPLT00000041052
637 - 6149
5513
ENSAPLT00000010256
637 - 6149
5513