Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004737.1_2307_2408_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2307 - 2408

Intron Length:

102

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGGGGA

5'SS Class:

strong_major

3'SS Sequence:

CTCCTCCCCGCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTCAC

U12 Branch Point Sequence:

CCCTTCTCACCT

Flanking Amino Acid:

DIYLHTPPAPVLNFFLDNRW

Intron Amino Acid Position:

504

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.2

0.81

0.9

69.2

37.4

Major BPS

0.87

0.8

85.6

Major PPT

74.8

0.56

0.7

24.8

Minor 5ss

23.1

-3.1

3.2

43.5

Minor BPS

48.3

-0

1.9

62.74

47.7

Associated Gene:

Gene:

TRIM46

Ensembl Gene ID:

ENSAPLG00000009819

Chromosome:

PEDO01004737.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044116

637 - 6149

5513

ENSAPLT00000041052

637 - 6149

5513

ENSAPLT00000010256

637 - 6149

5513