Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004737.1_2709_4128_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2709 - 4128

Intron Length:

1420

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACCGCA

5'SS Class:

major

3'SS Sequence:

CCTCTCCCCGCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GCCTGAT

U12 Branch Point Sequence:

GATGCCTGCCCC

Flanking Amino Acid:

KLLTDLAFIKVPEAPVIDTQ

Intron Amino Acid Position:

404

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.2

0.59

1.2

40.2

Major BPS

0.27

1.3

53.3

44.2

Major PPT

0.56

0.7

24.7

Minor 5ss

42.2

-0.9

3.2

56.9

47.3

Minor BPS

34.9

-1.1

3.5

53.04

44.1

Associated Gene:

Gene:

TRIM46

Ensembl Gene ID:

ENSAPLG00000009819

Chromosome:

PEDO01004737.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041052

637 - 6149

5513

ENSAPLT00000010256

637 - 6149

5513

ENSAPLT00000044116

637 - 6149

5513