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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004737.1_5132_5256_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5132 - 5256
Intron Length:
125

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGGCCT
5'SS Class:
major
3'SS Sequence:
CGTGTCCGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAA
U12 Branch Point Sequence:
GGTCCTAAAACT
Flanking Amino Acid:
TPPTLTFRPKGLMCPEHKEE
Intron Amino Acid Position:
199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
67.2
43.9
Major BPS
72.7
0.57
1
72.1
31.1
Major PPT
68.6
0.42
1
61.7
40
Minor 5ss
32.3
-2
3.5
48.5
47.2
Minor BPS
48
-0
1.9
68.14
42.2

Associated Gene:

Gene:
TRIM46
Ensembl Gene ID:
ENSAPLG00000009819
Chromosome:
PEDO01004737.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041052
637 - 6149
5513
ENSAPLT00000010256
637 - 6149
5513
ENSAPLT00000044237
637 - 6149
5513
ENSAPLT00000044116
637 - 6149
5513