Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004763.1_2508_2593_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

2508 - 2593

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGCGGC

5'SS Class:

strong_major

3'SS Sequence:

CCGTGCCGGGTAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

AGGCCAG

U12 Branch Point Sequence:

GCTGCCCGAGGC

Flanking Amino Acid:

VLALVKEPSFRCAVALDAWM

Intron Amino Acid Position:

243

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.2

0.78

0.9

66.6

39.6

Major BPS

35.9

-0.8

1.5

35.6

42.9

Major PPT

50.6

0.01

46.3

36.7

Minor 5ss

31.2

-2.1

3.3

41.1

45.6

Minor BPS

37.3

-0.9

2.1

44.54

43.2

Associated Gene:

Gene:

PAFAH2

Ensembl Gene ID:

ENSAPLG00000025024

Chromosome:

PEDO01004763.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031592

1417 - 4637

3221

ENSAPLT00000021550

1417 - 4637

3221