Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004763.1_4302_4446_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4302 - 4446

Intron Length:

145

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGCGGGAT

5'SS Class:

major

3'SS Sequence:

CTCTGTCCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCCCAC

U12 Branch Point Sequence:

TGTCCCCCCCCT

Flanking Amino Acid:

VDVMVGHTRQGLFLRLFYPC

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.64

69.3

37.1

Major BPS

49.9

-0

1.3

60.3

37.5

Major PPT

73.9

0.54

0.8

65.2

36.3

Minor 5ss

24.4

-2.9

3.6

36.9

47.7

Minor BPS

32.4

-1.2

3.6

63.5

Associated Gene:

Gene:

PAFAH2

Ensembl Gene ID:

ENSAPLG00000025024

Chromosome:

PEDO01004763.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021550

1417 - 4637

3221