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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004765.1_3376_3733_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3376 - 3733
Intron Length:
358

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTCCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TAATAATTATCT
Flanking Amino Acid:
MLLKQVFALSRAATPRESRL
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
78.4
29.1
Major BPS
80
0.75
1
78.6
31
Major PPT
86.2
0.81
0.8
80.9
31.3
Minor 5ss
28.5
-2.5
3
35.5
41.2
Minor BPS
49.8
0.06
2
72.95
42.9

Associated Gene:

Gene:
MRPL48
Ensembl Gene ID:
ENSAPLG00000008046
Chromosome:
PEDO01004765.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008365
3090 - 8846
5757