Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004765.1_4795_5529_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4795 - 5529

Intron Length:

735

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAGGCGTG

5'SS Class:

major

3'SS Sequence:

TTCCTTGATACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACATAAT

U12 Branch Point Sequence:

TTTTCCTTGATA

Flanking Amino Acid:

GKYKHLLPKEVPKRKKDKVQ

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.3

0.69

1.1

67.1

44.6

Major BPS

66.4

0.41

1.1

66.3

36.5

Major PPT

77.2

0.61

0.9

72.2

Minor 5ss

38.6

-1.3

3.7

54.5

49.7

Minor BPS

86.8

1.15

0.8

90.42

23.7

Associated Gene:

Gene:

MRPL48

Ensembl Gene ID:

ENSAPLG00000008046

Chromosome:

PEDO01004765.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008365

3090 - 8846

5757