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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004778.1_2614_2768_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2614 - 2768
Intron Length:
155

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGCGCG
5'SS Class:
major
3'SS Sequence:
ACGTCTCCTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TCATTTTTCACA
Flanking Amino Acid:
EASPRPGRPGCPTAPVRGKE
Intron Amino Acid Position:
178

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1
58.5
40.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
69.1
0.43
0.9
62.9
33.8
Minor 5ss
31.4
-2.1
3.2
35.7
42.1
Minor BPS
57.2
0.22
1.7
66.93
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015253
Chromosome:
PEDO01004778.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015890
815 - 4729
3915