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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004780.1_1539_1743_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1539 - 1743
Intron Length:
205

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCACGGCAC
5'SS Class:
strong_major
3'SS Sequence:
CCCCGCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTCT
U12 Branch Point Sequence:
CCCTCCTTTTTT
Flanking Amino Acid:
VDIAMLVENQGAMIDRIENN
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.85
1
67.1
41.1
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
64.6
0.33
0.8
57
27.2
Minor 5ss
19.7
-3.5
4
32
42.8
Minor BPS
40.6
-0.6
3.5
62.9
47.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014059
Chromosome:
PEDO01004780.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014633
204 - 1779
1576