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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004862.1_1212_1474_F

Intron Information:

Intron Rank:
142406
Intron Class:
major
Intron Phase:
Intron Coordinates:
1212 - 1474
Intron Length:
263

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
TTTTCAGGAGGA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
80.5
34.9
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
93
0.97
0.6
88.6
20.7
Minor 5ss
42.1
-0.9
2.9
55.5
43.9
Minor BPS
39.7
-0.7
2.5
61.44
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026698
Chromosome:
PEDO01004862.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025919
21 - 2022
2002