Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01004871.1_988_1073_R

Intron Information:

Intron Rank:

142766

Intron Class:

major

Intron Phase:

Intron Coordinates:

988 - 1073

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGCGG

5'SS Class:

strong_major

3'SS Sequence:

TTCCCCACCCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCTCAG

U12 Branch Point Sequence:

CCTTCCCCACCC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.8

0.84

64.3

47.1

Major BPS

58.4

0.21

1.5

67.6

40.6

Major PPT

71.4

0.48

0.8

62.6

33.1

Minor 5ss

30.2

-2.3

3.2

38.6

46.5

Minor BPS

45.7

-0.3

2.1

59.14

45.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024096

Chromosome:

PEDO01004871.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047529

427 - 1475

1049